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torsdag 29 oktober 2026

Dolikolinbiosynteesin geenejä ja proteiineja aluksi Mevalonaattitietä FPP asti ja sitten IPP kondensoimita FPP kanssa. C90-C100pituuksiin. Dolikolin tarvitsemaksi perusrungoksi.

 https://www.genecards.org/card/DHDDS

pidentää cis-prenyyliketjuja tuottan polyprenyyli runkoa

https://www.genecards.org/card/NUS1

Kondensoivat yhdessä IPP ja FPP muodostaen  

erittäin pitkiä  C90-C100 polypreenipyrofosfaatteja.


Sitten kolmannessa vaiheessa on uusia havaiittuja entsyymejäkin ja  kolmen vaiheen  askeleet.   tapahtumia. 


DHRSX proteiinista, jonka geeni sijaitsee PAR1 alueessa X ja Y kromosomissa . Yksi interaktio geeni on ZBED1 sinkkisormigeeni, myös PAR1 alueessa).

 GeneCards Summary

DHRSX encodes a polyprenol dehydrogenase that supports dolichol biosynthesis and positive regulation of autophagy. It has dolichal reductase [NAD(P)+] activity and polyprenol dehydrogenase activity, placing it at the intersection of lipid metabolism and membrane-associated redox chemistry. The protein is active in the lipid droplet and is found in the extracellular region, endoplasmic reticulum membrane, and cytosol.

Through its catalytic activity, DHRSX participates in the dolichol biosynthetic process and dolichyl monophosphate biosynthetic process, both of which are linked to protein metabolism pathways. Expression measurements show notable levels in the endocrine system, proximal digestive tract, and female reproductive system, providing tissue context for its metabolic role. The combination of localization in the endoplasmic reticulum membrane and lipid droplet with activity in the cytosol and extracellular region aligns with a function in cellular lipid handling and redox-linked biosynthesis.

Pathogenic variants in DHRSX are reported in congenital disorder of glycosylation, type 1Dd. This disorder is the principal clinical association for the gene and connects DHRSX to a glycosylation defect syndrome.

Also known as
  • SDR46C1
  • DHRS5X
  • DHRSXY
  • SDR7C6
  • Polyprenol Dehydrogenase
  • (and 13 more)
Associated Disorders
1 disorders from MalaCards
Genomic Variants
9 clinically significant variants and 531 structural variants
Pathways
5 pathways including in the categories Metabolism of proteins
Interactions
68 protein interactions and 1 DNA/RNA interactions
Publications
43 publications

ZBED1 sinkkisormiproeiinista

 https://www.genecards.org/card/ZBED1

GeneCards Summary

ZBED1 encodes a DNA-binding transcriptional activator located in the pseudoautosomal region 1 of the X and Y chromosomes. It was first identified for similarity to Ac transposable elements, but it lacks transposase activity and instead functions in the nucleus. As a zinc finger BED-type factor, it is part of the transcriptional machinery that links promoter recognition to gene activation.

ZBED1 binds promoter elements in ribosomal protein genes, including RPS6 and RPL10A, and also binds promoter regions of genes related to cell proliferation such as histone H1. It functions as an E3 SUMO ligase that sumoylates CHD3, causing its dissociation from chromatin. This alleviates transcriptional repression, enhances RNA polymerase II recruitment, and drives expression of growth-related genes. The protein localizes to the nucleus, PML body, nucleoplasm, and centrosome, and expression is high in the female reproductive system with substantial RNA and protein expression in muscle, adipose, endocrine, hematopoietic, and male reproductive tissues.

Clinical links for ZBED1 are limited in the provided evidence, but its activity is tied to transcriptional control of growth-related genes and cell proliferation. No specific diseases or named therapeutic agents are described here.

Also known as
  • ALTE
  • TRAMP
  • HDREF
  • DREF
  • KIAA0785
  • (and 8 more)
Genomic Variants
8 clinically significant variants and 19 structural variants
Pathways
4 pathways including in the categories Metabolism of proteins
Interactions
167 protein interactions
Publications
2 review publications and 66 publications

tisdag 27 oktober 2026

Lysoptosis

 Commun Biol

. 2022 Jan 12;5(1):47.
doi: 10.1038/s42003-021-02953-x.
Lysoptosis is an evolutionarily conserved cell death pathway moderated by intracellular serpins
AbstractLysosomal membrane permeabilization (LMP) and cathepsin release typifies lysosome-dependent cell death (LDCD). However, LMP occurs in most regulated cell death programs suggesting LDCD is not an independent cell death pathway, but is conscripted to facilitate the final cellular demise by other cell death routines. Previously, we demonstrated that Caenorhabditis elegans (C. elegans) null for a cysteine protease inhibitor, srp-6, undergo a specific LDCD pathway characterized by LMP and cathepsin-dependent cytoplasmic proteolysis. We designated this cell death routine, lysoptosis, to distinguish it from other pathways employing LMP. In this study, mouse and human epithelial cells lacking srp-6 homologues, mSerpinb3a and SERPINB3, respectively, demonstrated a lysoptosis phenotype distinct from other cell death pathways. Like in C. elegans, this pathway depended on LMP and released cathepsins, predominantly cathepsin L. These studies suggested that lysoptosis is an evolutionarily-conserved eukaryotic LDCD that predominates in the absence of neutralizing endogenous inhibitors.  © 2022. The Author(s).

Huomaa: SERPINB3(SCCA-1) on Katepsiini-L ja -V inhibiittori.

Serpiinit . Serpiini-klaadi B poikkeaa muista klaadeista A-I (ihmisen klaadit ) , koska niillä ei ole seriiniproteaasi.inhibitorista vaikutusta.

 https://pubmed.ncbi.nlm.nih.gov/14770295/

Serpins are unique among the various types of active site proteinase inhibitors because they covalently trap their targets by undergoing an irreversible conformational rearrangement. Members of the serpin superfamily are present in the three major domains of life (Bacteria, Archaea and Eukarya) as well as several eukaryotic viruses. The human genome encodes for at least 35 members that segregate evolutionarily into nine (A-I) distinct clades. Most of the human serpins are secreted and circulate in the bloodstream where they reside at critical checkpoints intersecting self-perpetuating proteolytic cascades such as those of the clotting, thrombolytic and complement systems. Unlike these circulating serpins, the clade B serpins (ov-serpins) lack signal peptides and reside primarily within cells. Most of the human clade B serpins inhibit serine and/or papain-like cysteine proteinases and protect cells from exogenous and endogenous proteinase-mediated injury. Moreover, as sequencing projects expand to the genomes of other species, it has become apparent that intracellular serpins belonging to distinct phylogenic clades are also present in the three major domains of life. As some of these serpins also guard cells against the deleterious effects of promiscuous proteolytic activity, we propose that this cytoprotective function, along with similarities in structure are common features of a cohort of intracellular serpin clades from a wide variety of species.

HDAC deasetylaaseja on 11 geeniä.

 Geeni HDAC11

https://www.genecards.org/card/HDAC11?search=HDAC,9-

Tämän artikkelin yhteydessä kerrotaan NOTCH- HLH signaalitiestä tarkasti,i

sillä tämä tumaan sijoittunut  HDAC -geeni ja sen koodaama proteiini   säätäa epigenetiikkaa ja kromatiinin organisaatiota  NOTCH - THL  signaalitiessäkin.  eli     T-lymfosyyttien  kehitystä. 

Sirtuiini inhibiittorit, HDAC inhibiittorit onkologiassa

 Sirtuiini-inhibiittorien kehittely on monimutkaisemoaa ja niitä ei esiinnyt kliinisessö käytössä  vielä. HDAC inhibiittoteita on jo käytössä ja kombinoidussa   kemoterapiassa. 


NYKYVAIHE uusinta tietoa  SIRT ja HDAC  tutkimuksistq 


Histones deacetylases in the epidermis: structure, functions and therapeutic implications.
Nguyen Van C, Lamartine J.Front Epigenet Epigenom. 2025 Dec 8;3:1711733. doi: 10.3389/freae.2025.1711733. eCollection 2025.PMID: 42840508 Free PMC article. Review.
Histone deacetylases (HDACs) are key epigenetic regulators that catalyze the removal of acetyl groups from histones and non-histone proteins, thereby modulating chromatin accessibility and gene expression. The HDAC family is composed of 11 HDACs and seven sirtuins t …
Investigation of the classical histone deacetylases and sirtuins using peptide technologies.
Rogers JM, Olsen CA.Cell Chem Biol. 2026 Oct 15;33(10):1373-1386. doi: 10.1016/j.chembiol.2026.08.009. Epub 2026 Sep 8.PMID: 42710487 Review.
Histone deacetylase (HDAC) enzymes are hydrolases that remove acyl-based modifications from the side chains of lysine residues in our proteome. ...Due to their central regulatory roles, HDACs have been investigated as drug targets, resulting in several drugs approved for c …
Comparative transcriptomics analysis of histone deacetylases, transcription factors, and ion channel genes in human iPSC-cardiomyocytes vs. the adult human heart.
Pozo MR, Pressler MP, Horvath A, Entcheva E.J Precis Med (Amst). 2026 Jun;6:100031. doi: 10.1016/j.premed.2026.100031. Epub 2026 Mar 18.PMID: 42644057 Free PMC article.
Epigenetic modulators such as histone deacetylases (HDACs) and histone acetyltransferases (HATs) are known master regulators of gene expression that substantially impact cardiac electrophysiology. Novel pharmacological agents, HDAC inhibitors, are rapidly emerging a …
Protein acetylation in atherosclerosis: beyond inflammation to core cellular processes and therapeutic potential.
Dong Z, Zhou Y, Gao Y, Guo R, He X, Deng Y, Chen Y, Zhu Q, Wei J, Guo Z.Front Immunol. 2026 Jul 28;17:1784874. doi: 10.3389/fimmu.2026.1784874. eCollection 2026.PMID: 42582908 Free PMC article. Review.
This review systematically summarizes the major forms of protein acetylation, including N-terminal acetylation and lysine acetylation, as well as the key regulatory enzymes involved, such as acetyltransferases (e.g., HATs and NATs) and deacetylases (e.g., HDACs and sirtuins …
Profile of lysine acetylation in Eimeria tenella and its potential implications for anticoccidial research.
Huang H, Mo H, Zhang Z, Yang Y, Yang W, Jiang Y, Wang N, Wang J, Shi C, Cao X, Zeng Y, Wang C, Yang G.Parasit Vectors. 2026 Jul 7;19(1):419. doi: 10.1186/s13071-026-07550-7.PMID: 42415098 Free PMC article.
Moreover, the anticoccidial efficacy of histone deacetylase (HDAC) inhibitors was evaluated both in vitro and in vivo. RESULTS: In total, 341 differentially acetylated proteins and 558 differentially acetylated modification sites were identified. ...It has been sugg …
Sirtuin inhibition by plumbagin connects protein acetylation to cell division.
Sirri V, Vidal A, Roussel P.J Cell Sci. 2026 Apr 1;139(7):jcs264052. doi: 10.1242/jcs.264052. Epub 2026 Apr 13.PMID: 41877684
This plumbagin-induced delay in cell division was reproduced by class III histone deacetylase (HDAC) inhibitors but not by the class I, II and IV pan-HDAC inhibitor trichostatin A; therefore, it most likely involves sirtuins. ...