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söndag 24 maj 2026

EBOLA VP30 tarvitsee fosforylaation. Tässä avustaa kinaasit SRPK1 ja 2.

 2022

https://pubmed.ncbi.nlm.nih.gov/35993739/

2025

https://pubmed.ncbi.nlm.nih.gov/39726359/



 Gene    https://www.genecards.org/cgi-bin/carddisp.pl?gene=SRPK1&keywords=SRPK1




NCBI Gene Summary for SRPK1 Gene

Aliases for SRPK1 Gene

  • GeneCards Symbol: SRPK1 2 
  • SRSF Protein Kinase 1 2 3 4 5
  • SFRS Protein Kinase 1 2 3 4
  • SFRSK1 2 3 5
  • Serine/Arginine-Rich Splicing Factor Kinase 1 2 3
  • SR-Protein-Specific Kinase 1 3 4
  • EC 2.7.11.1 4 47
  • Serine/Arginine-Rich Protein-Specific Kinase 1 4
  • Serine/Threonine-Protein Kinase SRPK1 3
  • SR Protein Kinase 1 2

 

  • This gene encodes a serine/arginine protein kinase specific for the SR (serine/arginine-rich domain) family of splicing factors. The protein localizes to the nucleus and the cytoplasm. It is thought to play a role in regulation of both constitutive and alternative splicing by regulating intracellular localization of splicing factors. Alternative splicing of this gene results in multiple transcript variants. Additional alternatively spliced transcript variants have been described for this gene, but their full length nature have not been determined.[provided by RefSeq, Jul 2010]

GeneCards Summary for SRPK1 Gene

SRPK1 (SRSF Protein Kinase 1) is a Protein Coding gene. Diseases associated with SRPK1 include Denys-Drash Syndrome and Lung Cancer. Among its related pathways are Infectious disease and Translation of Structural Proteins. Gene Ontology (GO) annotations related to this gene include RNA binding and protein kinase activity. An important paralog of this gene is SRPK2.https://www.genecards.org/cgi-bin/carddisp.pl?gene=SRPK2

UniProtKB/Swiss-Prot Summary for SRPK1 Gene

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Isoform 2 phosphorylates SFRS2, ZRSR2, LBR and PRM1. Isoform 2 phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Isoform 2 can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Isoform 1 and isoform 2 can induce splicing of exon 10 in MAPT/TAU. The ratio of isoform 1/isoform 2 plays a decisive role in determining cell fate in K-562 leukaemic cell line: isoform 2 favors proliferation where as isoform 1 favors differentiation. ( SRPK1_HUMAN,Q96SB4 )

lördag 23 maj 2026

Ebolaviruksen VP30 on sinkkisormiproteiini. VP30 on transkription aktivaattoriproteiini.Mitä uutta tietoa siitä PubMed antaa?

 https://journals.asm.org/doi/10.1128/jvi.77.5.3334-3338.2003


Development of VP30-targeted nanoparticles using DPS4 fusion peptides for the inhibition of Ebola virus.
Wu F, Huang Y, Li R, Gao P, Lv P, Wu G, Ma Y, Ding Q, Zhong J, Su J, Xu W.J Nanobiotechnology. 2026 Mar 11;24(1):371. doi: 10.1186/s12951-026-04260-1.PMID: 41814375 Free PMC article.
VP30, a critical RNA synthesis factor, interacts with nucleoprotein (NP) to facilitate Ebola viral genome transcription and replication. ...Antiviral effects were evaluated using minigenome and transcription and replication-competent virus-like particl
 
The Ebolavirus Transcription Regulatory Signal Equilibrates Between Two Structural Conformations to Affect VP30 Binding.
Edwards JM, Kachale A, McCleery SR, Law GA, Patel V, D'Souza VM, Pham VV.J Mol Biol. 2025 Dec 15;437(24):169464. doi: 10.1016/j.jmb.2025.169464. Epub 2025 Sep 25.PMID: 41015113
The transcription of ebolavirus (EBOV) genomes is a major checkpoint in the viral life cycle. ...Mutational studies demonstrate that the entire hairpin structure is important in directing both VP30 binding and regulating EBOV transcriptional activit
 
Computational study of interaction of calixarene with ebola virus structural proteins and its potential therapeutic implications.
Jamal QMS, Ansari MA, Alharbi AH, Alomary MN, Jamous YF, Dutta T, Maity A, Ahmad V.J Mol Graph Model. 2025 May;136:108976. doi: 10.1016/j.jmgm.2025.108976. Epub 2025 Feb 12.PMID: 39961277
Ebola virus (EBOV) is a negative-strand RNA virus that causes hemorrhagic fever and fatal illness in humans. According to WHO, the Ebola virus caused 28,646 fatal cases and 11,323 deaths in West Africa due to hemorrhagic fever and deadly
 
To be or not to be phosphorylated: understanding the role of Ebola virus nucleoprotein in the dynamic interplay with the transcriptional activator VP30 and the host phosphatase PP2A-B56.
Kämper L, Kuhl I, Vallbracht M, Hoenen T, Linne U, Weber A, Chlanda P, Kracht M, Biedenkopf N.Emerg Microbes Infect. 2025 Dec;14(1):2447612. doi: 10.1080/22221751.2024.2447612. Epub 2025 Jan 12.PMID: 39726359 Free PMC article.
Ebola virus (EBOV) transcription is essentially regulated via dynamic dephosphorylation of its viral transcription activator VP30 by the host phosphatase PP2A. ...This study investigates NP's role in VP30 dephosphorylation and transcri
 
Ginkgolic acid inhibits Ebola virus transcription and replication by disrupting the interaction between nucleoprotein and VP30 protein.
Peng C, Wu F, Ma Y, Liu G, Huang Y, Tong R, Xu W.Antiviral Res. 2025 Feb;234:106074. doi: 10.1016/j.antiviral.2024.106074. Epub 2024 Dec 22.PMID: 39716669
The antiviral efficacy of ginkgolic acid was demonstrated in the EBOV transcription- and replication-competent virus-like particle (trVLP) system. Furthermore, we resolved the crystal structure of the VP30-ginkgolic acid complex, revealing two ginkgolic acid molecul …https://www.genecards.org/cgi-bin/carddisp.pl?gene=RBBP6&keywords=RBBP6
 
The cellular protein phosphatase 2A is a crucial host factor for Marburg virus transcription.
von Creytz I, Rohde C, Biedenkopf N.J Virol. 2024 Sep 17;98(9):e0104724. doi: 10.1128/jvi.01047-24. Epub 2024 Aug 28.PMID: 39194238 Free PMC article.
Previous studies assumed that dephosphorylation of the filoviral transcription factor VP30 supports transcription, while phosphorylated VP30 reduces transcription. Here, we focused on the role of the host protein phosphatase 2A (PP2A) for VP3
 
Hippo signaling pathway regulates Ebola virus transcription and egress.
Liang J, Djurkovic MA, Leavitt CG, Shtanko O, Harty RN.Nat Commun. 2024 Aug 13;15(1):6953. doi: 10.1038/s41467-024-51356-z.PMID: 39138205 Free PMC article.
Here, we identify LATS1/2 kinases and YAP, key components of the Hippo pathway, as critical regulators of EBOV transcription and egress. Specifically, we find that when YAP is phosphorylated by LATS1/2, it localizes to the cytoplasm (Hippo "ON") where it sequesters VP40 to …
 
Development of a Měnglà virus minigenome and comparison of its polymerase complexes with those of other filoviruses.
Xie SZ, Yao K, Li B, Peng C, Yang XL, Shi ZL.Virol Sin. 2024 Jun;39(3):459-468. doi: 10.1016/j.virs.2024.03.011. Epub 2024 May 21.PMID: 38782261 Free PMC article.
Ebola virus (EBOV) and Marburg virus (MARV), members of the Filoviridae family, are highly pathogenic and can cause hemorrhagic fevers, significantly impacting human society. ...In this study, we used RACE technology to sequence the 3'-leader and 5'-trailer of Mengla virushttps://cdn.ncbi.nlm.nih.gov/pmc/blobs/04da/11279764/b959835795f8/gr1.gif 
  
ICTV Virus Taxonomy Profile: Filoviridae 2024.
Biedenkopf N, Bukreyev A, Chandran K, Di Paola N, Formenty PBH, Griffiths A, Hume AJ, Mühlberger E, Netesov SV, Palacios G, Pawęska JT, Smither S, Takada A, Wahl V, Kuhn JH.J Gen Virol. 2024 Feb;105(2):001955. doi: 10.1099/jgv.0.001955.PMID: 38305775 Free PMC article.
The filovirid genome is a linear, non-segmented RNA with five canonical open reading frames (ORFs) that encode a nucleoprotein (NP), a polymerase cofactor (VP35), a glycoprotein (GP(1,2)), a transcriptional activator (VP30) and a large protein (L) containing …                                         
 
N(6)-methyladenosine is required for efficient RNA synthesis of Ebola virus and other haemorrhagic fever viruses.
Wendt L, Pickin MJ, Bodmer BS, Reiche S, Fénéant L, Hölper JE, Fuchs W, Groseth A, Hoenen T. Emerg Microbes Infect. 2023 Dec;12(2):2223732. doi: 10.1080/22221751.2023.2223732.PMID: 37306620 Free PMC article.N6-methyladenosine (m6A) is one of the most abundant modifications of cellular RNA, where it serves various functions. m6A methylation of many viral RNA species has also been described; however, little is known about the m6A epitranscriptome of haemorrhagic fever-causing viruses like Ebola virus (EBOV). Here, we analysed the importance of the methyltransferase METTL3 for the life cycle of this virus. We found that METTL3 interacts with the EBOV nucleoprotein and the transcriptional activator VP30 to support viral RNA synthesis, and that METTL3 is recruited into EBOV inclusions bodies, where viral RNA synthesis occurs. Analysis of the m6A methylation pattern of EBOV mRNAs showed that they are methylated by METTL3. Further studies revealed that METTL3 interaction with the viral nucleoprotein, as well as its importance for RNA synthesis and protein expression, is also observed for other haemorrhagic fever viruses such as Junín virus (JUNV) and Crimean-Congo haemorrhagic fever virus (CCHFV). The negative effects on viral RNA synthesis due to loss of m6A methylation are independent of innate immune sensing, as METTL3 knockout did not affect type I interferon induction in response to viral RNA synthesis or infection. Our results suggest a novel function for m6A that is conserved among diverse haemorrhagic fever-causing viruses (i.e. EBOV, JUNV and CCHFV), making METTL3 a promising target for broadly-acting antivirals.

Keywords: Crimean-Congo haemorrhagic fever virus; Ebola virus; Junín virus; METTL3; arenavirus; filovirus; m6A; orthonairovirus.


SLC39A9 , Ebolaviruksen tarvitsema sinkinkujettajaproteiini , jota virus käyttää etsiytyessään endosomaalisiiin solunsisäteihin. Onkohan miehet alttiimpia Ebolaviruksille???


https://www.genecards.org/cgi-bin/carddisp.pl?gene=SLC39A9&keywords=SLC39A9

https://pathway-viewer.toolforge.org/embed/WP3529

  • GeneCards Symbol: SLC39A9 2 
  • Solute Carrier Family 39 Member 9 2 3 4 5
  • ZIP9 2 3 4 5
  • Zrt- And Irt-Like Protein 9 3 4
  • ZRT/IRT-Like Protein 9 2 3
  • Zinc Transporter ZIP9 3 4
  • Zinc Transporter 9 2 3
  • FLJ11274 2 5
  • ZIP-9 3 4
  • Solute Carrier Family 39 (Zinc Transporter), Member 9 3
  • Solute Carrier Family 39, Member 9 2
  • Zinc Transporter SLC39A9 
  • Enables G protein-coupled receptor activity; androgen binding activity; and zinc efflux transmembrane transporter activity.
Involved in intracellular zinc ion homeostasis; regulation of vascular endothelial cell proliferation; and zinc ion transmembrane transport. 
Located in several cellular components, including mitochondrial membrane; perinuclear region of cytoplasm; and trans-Golgi network. [provided by Alliance of Genome Resources, Jul 2025]

    GeneCards Summary for SLC39A9 Gene

    SLC39A9 (Solute Carrier Family 39 Member 9) is a Protein Coding gene. Diseases associated with SLC39A9 include Brown-Vialetto-Van Laere Syndrome 2 and Androgen Insensitivity Syndrome. Among its related pathways are Nuclear receptors meta-pathway and Metal ion SLC transporters. Gene Ontology (GO) annotations related to this gene include metal ion transmembrane transporter activity.

    UniProtKB/Swiss-Prot Summary for SLC39A9 Gene

    Mediates androgen-induced vascular endothelial cell proliferation through activation of an inhibitory G protein leading to the AKT1 and MAPK3/MAPK1 (Erk1/2) activation which in turn modulate inhibition (phosphorylation) of GSK3B and CCND1 transcription (PubMed:34555425). Moreover, has dual functions as a membrane-bound androgen receptor and as an androgen-dependent zinc transporter both of which are mediated through an inhibitory G protein (Gi) that mediates both MAP kinase and zinc signaling leading to the androgen-dependent apoptotic process (PubMed:25014355, 28219737). ( S39A9_HUMAN,Q9NUM3 )

Function:
  • Transports zinc ions across cell and organelle membranes into the cytoplasm and regulates intracellular zinc homeostasis (PubMed:19420709, 25014355, 28219737).
    Participates in the zinc ions efflux out of the secretory compartments (PubMed:19420709).
    Regulates intracellular zinc level, resulting in the enhancement of AKT1 and MAPK3/MAPK1 (Erk1/2) phosphorylation in response to the BCR activation (PubMed:23505453).
    Also functions as a membrane androgen receptor that mediates, through a G protein, the non-classical androgen signaling pathway, characterized by the activation of MAPK3/MAPK1 (Erk1/2) and transcription factors CREB1 or ATF1 (By similarity).
    This pathway contributes to CLDN1 and CLDN5 expression and tight junction formation between adjacent Sertoli cells (By similarity).
    Mediates androgen-induced vascular endothelial cell proliferation through activation of an inhibitory G protein leading to the AKT1 and MAPK3/MAPK1 (Erk1/2) activation which in turn modulate inhibition (phosphorylation) of GSK3B and CCND1 transcription (PubMed:34555425).
    Moreover, has dual functions as a membrane-bound androgen receptor and as an androgen-dependent zinc transporter both of which are mediated through an inhibitory G protein (Gi) that mediates both MAP kinase and zinc signaling leading to the androgen-dependent apoptotic process (PubMed:25014355, 28219737). S39A9_HUMAN,Q9NUM3
CatalyticActivity:
Induction: